PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_F512146B2.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 242aa    MW: 25655.8 Da    PI: 5.2747
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_F512146B2.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.73.6e-53441491101
                  NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                            ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa+
  Traes_4DL_F512146B2.2  44 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAI 131
                            89*****997665555689********************************************************************* PP

                  NF-YC  84 trtdifdflvdivprdel 101
                            +rtd+fdflvdivpr+e 
  Traes_4DL_F512146B2.2 132 ARTDVFDFLVDIVPREEA 149
                            ***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.87E-3229140IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.6E-3760131IPR009072Histone-fold
PfamPF008082.7E-2068131IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MENHQLPYTT QPPATGAAGG APVPGVPGPP PVPHHHLLQQ QQAQLQAFWA YQRQEAERAS  60
ASDFKNHQLP LARIKKIMKA DEDVRMISAE APVLFAKACE LFILELTIRS WLHAEENKRR  120
TLQRNDVAAA IARTDVFDFL VDIVPREEAK EEPGSAALGF AAGGVGAAGG GPAAGLPYYY  180
PPMGQPAAPM MPAWHVPAWE PAWQQGGADV DQGAGSFGEE GQGYTGGHGG SAGFPPGPPS  240
SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-434514619119HapE
4g92_C2e-434514619119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124RRTLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787290.0KM078729.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-D5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147992.11e-114nuclear transcription factor Y subunit C-1
RefseqXP_008675138.11e-114PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1
SwissprotQ9FMV52e-75NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A096URG81e-175A0A096URG8_WHEAT; Uncharacterized protein
STRINGMLOC_69830.11e-124(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-62nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]